STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_00012Hypothetical protein. (289 aa)    
Predicted Functional Partners:
C806_00013
Hypothetical protein.
 
     0.800
dsdA
D-serine ammonia-lyase; Belongs to the serine/threonine dehydratase family. DsdA subfamily.
       0.782
C806_04459
Hypothetical protein; Belongs to the glycosyl hydrolase 31 family.
    
  0.776
C806_00010
Amino acid carrier protein.
       0.773
C806_00011
Hypothetical protein.
       0.773
C806_00008
Hypothetical protein.
    
  0.699
C806_04298
Hypothetical protein.
    
 0.676
alaS
alanyl-tRNA synthetase 1; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
     
  0.662
C806_00991
Hypothetical protein.
  
 
 0.640
C806_03837
xaa-Pro aminopeptidase.
    
 0.635
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.