Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_00210Hypothetical protein. (142 aa)    
Predicted Functional Partners:
C806_00211
Hypothetical protein.
 
    0.964
C806_00209
Stage V sporulation protein AC.
 
  
 0.915
C806_00197
Stage V sporulation protein AD.
 
  
 0.823
C806_00212
Hypothetical protein.
       0.752
C806_00215
Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
     0.732
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
 
     0.728
C806_00196
Stage V sporulation protein AE.
 
  
 0.706
C806_00213
RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.690
C806_03296
Hypothetical protein; Belongs to the peptidase S8 family.
  
     0.671
C806_01083
Stage III sporulation protein AE.
  
     0.662
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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