STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_00422Hypothetical protein. (413 aa)    
Predicted Functional Partners:
C806_00420
Hypothetical protein.
 
     0.944
C806_00421
Hypothetical protein.
 
     0.927
C806_00615
Hypothetical protein.
  
     0.734
C806_02140
Hypothetical protein.
  
     0.724
C806_00419
Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.696
C806_04167
Hypothetical protein.
  
     0.653
C806_00614
Hypothetical protein.
  
     0.645
C806_02077
Hypothetical protein.
  
     0.585
C806_02661
Hypothetical protein.
  
     0.559
C806_02141
Hypothetical protein.
  
     0.544
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.