Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_00433Hypothetical protein. (214 aa)    
Predicted Functional Partners:
C806_00435
Hypothetical protein.
 
     0.887
C806_02470
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.
    
 0.810
C806_00432
Hypothetical protein.
       0.773
C806_00434
Hypothetical protein.
       0.722
C806_00436
Hypothetical protein.
       0.694
C806_03331
Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein.
     
  0.680
C806_02668
Hypothetical protein.
  
 
  0.657
C806_01651
Molybdenum cofactor biosynthesis protein C.
  
  
  0.627
C806_00270
Hypothetical protein.
   
 
  0.626
C806_03830
Hypothetical protein.
   
 
  0.626
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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