Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_00467Hypothetical protein. (399 aa)    
Predicted Functional Partners:
C806_00468
Hypothetical protein.
 
 
 0.994
C806_00469
Hypothetical protein.
 
 
 0.990
C806_00475
Hypothetical protein.
 
  
  0.845
C806_00472
Hypothetical protein.
 
  
 0.798
C806_00471
Hypothetical protein.
 
     0.795
C806_00465
Hypothetical protein.
       0.791
C806_00466
Hypothetical protein.
       0.791
C806_00470
Hypothetical protein.
 
     0.700
C806_03855
Hypothetical protein.
  
  
 
0.669
C806_03943
Hypothetical protein.
  
 
 0.569
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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