Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_00478Hypothetical protein. (138 aa)    
Predicted Functional Partners:
C806_04141
Hypothetical protein.
   
  0.859
lysS
lysine-tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
 
 0.820
C806_00477
Hypothetical protein.
       0.799
C806_00344
Glutamine synthetase, type I.
   
   0.788
cobB
NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
    
  0.777
C806_04452
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
   0.660
C806_02649
Hypothetical protein.
  
  0.550
C806_01663
Hypothetical protein.
  
   0.525
C806_04063
Hypothetical protein.
  
   0.525
C806_03760
Hypothetical protein.
  
 0.523
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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