C806_00566 protein (Lachnospiraceae bacterium 31)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C806_00566

Hypothetical protein. (135 aa)

Predicted Functional Partners:

C806_00570

0.998

C806_00567

0.996

C806_00215

0.860

C806_00213

0.843

C806_03956

0.843

C806_03962

0.843

C806_03966

0.843

C806_03970

0.843

C806_03936

0.835

C806_04377

0.835

Your Current Organism:

Lachnospiraceae bacterium 31

NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
C806_00213	C806_00215	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.	0.970
C806_00213	C806_00566	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Hypothetical protein.	0.843
C806_00213	C806_00567	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Hypothetical protein.	0.587
C806_00213	C806_03936	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	FliA/WhiG family RNA polymerase sigma factor; Belongs to the sigma-70 factor family.	0.648
C806_00213	C806_04377	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Hypothetical protein.	0.648
C806_00215	C806_00213	Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.970
C806_00215	C806_00566	Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.	Hypothetical protein.	0.860
C806_00215	C806_03936	Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.	FliA/WhiG family RNA polymerase sigma factor; Belongs to the sigma-70 factor family.	0.413
C806_00215	C806_04377	Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.	Hypothetical protein.	0.413
C806_00566	C806_00213	Hypothetical protein.	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.843
C806_00566	C806_00215	Hypothetical protein.	Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.	0.860
C806_00566	C806_00567	Hypothetical protein.	Hypothetical protein.	0.996
C806_00566	C806_00570	Hypothetical protein.	Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.	0.998
C806_00566	C806_03936	Hypothetical protein.	FliA/WhiG family RNA polymerase sigma factor; Belongs to the sigma-70 factor family.	0.835
C806_00566	C806_03956	Hypothetical protein.	Chemotaxis protein MotA.	0.843
C806_00566	C806_03962	Hypothetical protein.	Hypothetical protein.	0.843
C806_00566	C806_03966	Hypothetical protein.	Flagellar motor switch protein FliG.	0.843
C806_00566	C806_03970	Hypothetical protein.	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	0.843
C806_00566	C806_04377	Hypothetical protein.	Hypothetical protein.	0.835
C806_00567	C806_00213	Hypothetical protein.	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.587