STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_00567Hypothetical protein. (543 aa)    
Predicted Functional Partners:
C806_00570
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
 
 0.997
C806_00566
Hypothetical protein.
 0.996
C806_04460
Hypothetical protein.
 
 
 0.969
C806_03810
Hypothetical protein.
  
 
 0.950
C806_00393
Hypothetical protein.
  
 
 0.949
C806_03451
PAS domain S-box protein.
  
 
 0.949
C806_04560
Hypothetical protein.
 
  
 0.933
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
 0.924
C806_01880
Hypothetical protein.
   
    0.904
C806_03141
[FeFe] hydrogenase H-cluster radical SAM maturase HydG.
   
    0.871
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.