STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_00583Diguanylate cyclase (GGDEF) domain-containing protein. (565 aa)    
Predicted Functional Partners:
C806_00584
Hypothetical protein.
 
 
 0.964
C806_04460
Hypothetical protein.
 
0.958
C806_03952
Flagellar motor switch protein FliN.
  
 
 0.957
C806_04452
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
    
 0.940
C806_03451
PAS domain S-box protein.
 
 0.908
C806_03474
Hypothetical protein.
 
 0.906
C806_00393
Hypothetical protein.
 
0.899
C806_04130
Hypothetical protein.
 
 0.888
C806_03810
Hypothetical protein.
 
0.879
C806_01305
PAS domain S-box protein.
 
 0.878
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.