Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_00916Hypothetical protein. (417 aa)    
Predicted Functional Partners:
C806_00917
Hypothetical protein.
 
     0.921
C806_00915
Hypothetical protein.
       0.773
C806_00144
Hypothetical protein.
 
 0.768
C806_03199
Hypothetical protein.
 
 0.758
C806_01380
Methionine synthase.
   
 
  0.751
C806_02252
Chorismate mutase.
  
 
 0.728
C806_02305
Hypothetical protein.
 
     0.650
C806_00222
Hypothetical protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
    
 0.591
C806_00923
Hypothetical protein.
 
  
 0.528
C806_00575
Hypothetical protein.
  
  
 0.512
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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