Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_00949Hypothetical protein. (393 aa)    
Predicted Functional Partners:
C806_00948
Hypothetical protein.
   
  0.964
C806_00950
Hypothetical protein; Belongs to the glutamate--cysteine ligase type 1 family.
    
 0.899
C806_01380
Methionine synthase.
    
  0.878
luxS
HAD hydrolase, family IA; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.
     
 0.863
C806_03546
Hypothetical protein.
    
 0.852
C806_01765
Homoserine dehydrogenase.
    
  0.841
C806_01200
Threonine ammonia-lyase.
     
  0.839
C806_01406
xaa-His dipeptidase.
     
  0.830
C806_02640
Hypothetical protein.
    
  0.812
C806_00594
Cystathione beta-lyase.
 
  
 
0.759
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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