Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_00979Hypothetical protein. (213 aa)    
Predicted Functional Partners:
C806_03489
Hypothetical protein.
  
 0.825
C806_03994
Hypothetical protein.
  
 0.825
C806_00980
Hypothetical protein.
       0.780
C806_01163
Hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 0.767
C806_00977
FeS cluster assembly scaffold protein NifU.
       0.720
C806_00978
Serine O-acetyltransferase.
       0.717
C806_02251
Hypothetical protein.
    
  0.715
C806_01802
Hypothetical protein.
  
 
  0.665
iscS
Cysteine desulfurase NifS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
  
    0.636
C806_00763
Hypothetical protein.
   
 0.628
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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