STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C806_01005Pseudaminic acid synthase. (350 aa)    
Predicted Functional Partners:
C806_01012
Pseudaminic acid biosynthesis-associated protein PseG.
 
 
 0.989
C806_01004
UDP-N-acetylglucosamine 4,6-dehydratase.
 
 
 0.964
C806_01008
Hypothetical protein.
 
  
 0.959
C806_02761
Hypothetical protein.
 
 
 0.945
C806_01003
Hypothetical protein.
 
   
 0.930
C806_02751
UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing.
 
 
 0.858
C806_01006
Hypothetical protein.
 
   
 0.837
C806_01013
UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.813
C806_01002
Hypothetical protein.
       0.773
C806_02744
Hypothetical protein.
 
   
 0.719
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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