STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_01080Stage III sporulation protein AB. (170 aa)    
Predicted Functional Partners:
C806_01079
Stage III sporulation protein AA.
 
  
 0.996
C806_01081
Stage III sporulation protein AC.
 
  
 0.987
C806_01083
Stage III sporulation protein AE.
 
  
 0.974
C806_01082
Stage III sporulation protein AD.
 
  
 0.968
C806_01085
Stage III sporulation protein AG.
 
  
 0.961
C806_01084
Stage III sporulation protein AF.
 
  
 0.953
C806_01086
Hypothetical protein.
 
  
 0.877
C806_01405
Sporulation integral membrane protein YlbJ.
  
   
 0.747
C806_02431
sigma-E processing peptidase SpoIIGA.
  
  
 0.740
C806_03761
Stage II sporulation protein M.
  
  
 0.725
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.