STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_01174Hypothetical protein. (374 aa)    
Predicted Functional Partners:
C806_04460
Hypothetical protein.
   
 0.853
C806_00393
Hypothetical protein.
    
 0.755
C806_03451
PAS domain S-box protein.
    
 0.755
C806_01175
Hypothetical protein.
       0.735
C806_01176
Hypothetical protein.
       0.718
C806_04132
Hypothetical protein.
  
 0.712
C806_02545
Hypothetical protein.
  
 
   0.676
C806_00610
ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.
   
  0.665
C806_01267
Hypothetical protein.
   
  0.665
C806_04298
Hypothetical protein.
    
 0.662
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.