rnc protein (Lachnospiraceae bacterium 31) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rnc

Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (234 aa)

Predicted Functional Partners:

rpmF

0.922

C806_02024

0.914

C806_02597

0.914

rplS

0.914

C806_00610

0.913

C806_02259

0.906

rnpA

0.901

rpmA

0.900

rpsI

0.898

prfB

0.890

Your Current Organism:

Lachnospiraceae bacterium 31

NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C806_00610	C806_02024	C806_00610	C806_02024	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	Hypothetical protein.	0.902
C806_00610	C806_02597	C806_00610	C806_02597	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	Hypothetical protein.	0.902
C806_00610	prfB	C806_00610	C806_01770	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	0.879
C806_00610	rnc	C806_00610	C806_01197	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.913
C806_00610	rnpA	C806_00610	C806_00325	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	0.456
C806_00610	rplS	C806_00610	C806_04440	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.490
C806_00610	rpmA	C806_00610	C806_02400	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.489
C806_00610	rpmF	C806_00610	C806_01193	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.511
C806_00610	rpsI	C806_00610	C806_02043	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.611
C806_02024	C806_00610	C806_02024	C806_00610	Hypothetical protein.	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	0.902
C806_02024	rnc	C806_02024	C806_01197	Hypothetical protein.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.914
C806_02024	rpmA	C806_02024	C806_02400	Hypothetical protein.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.509
C806_02024	rpsI	C806_02024	C806_02043	Hypothetical protein.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.715
C806_02259	rnc	C806_02259	C806_01197	Hypothetical protein.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.906
C806_02597	C806_00610	C806_02597	C806_00610	Hypothetical protein.	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	0.902
C806_02597	rnc	C806_02597	C806_01197	Hypothetical protein.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.914
C806_02597	rpmA	C806_02597	C806_02400	Hypothetical protein.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.509
C806_02597	rpsI	C806_02597	C806_02043	Hypothetical protein.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.715
prfB	C806_00610	C806_01770	C806_00610	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	0.879
prfB	rnc	C806_01770	C806_01197	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.890

page 1 of 4

Server load: medium (58%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About