STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_01200Threonine ammonia-lyase. (403 aa)    
Predicted Functional Partners:
C806_00178
Acetolactate synthase, small subunit.
 
 0.972
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
 
 0.954
C806_00175
Branched-chain amino acid aminotransferase.
  
 0.952
C806_04452
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.952
C806_02501
Acetolactate synthase, large subunit, biosynthetic type.
 
 0.946
C806_00179
Acetolactate synthase, large subunit, biosynthetic type.
 
 0.944
C806_02231
Acetolactate synthase, small subunit.
 
 0.937
C806_02239
Threonine synthase.
  
 
 0.923
C806_01380
Methionine synthase.
  
 0.919
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
  
 0.904
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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