STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_01407Hypothetical protein. (279 aa)    
Predicted Functional Partners:
C806_01405
Sporulation integral membrane protein YlbJ.
 
     0.729
C806_01408
Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.
       0.701
C806_04298
Hypothetical protein.
    
  0.688
C806_01409
DegV family EDD domain-containing protein.
       0.661
C806_03952
Flagellar motor switch protein FliN.
    
   0.648
C806_01406
xaa-His dipeptidase.
       0.642
C806_00210
Hypothetical protein.
  
    0.632
C806_00211
Hypothetical protein.
  
     0.616
C806_01542
Hypothetical protein.
     
 0.577
C806_01604
Hypothetical protein.
     
 0.577
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.