STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_01451Hypothetical protein. (297 aa)    
Predicted Functional Partners:
C806_01452
Hypothetical protein.
       0.697
C806_02279
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
  0.682
C806_02470
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.
  
 
 0.635
C806_03785
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
   
  0.575
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
     
  0.550
C806_02047
Hypothetical protein.
  
 
  0.544
C806_00553
Hypothetical protein.
    
  0.540
C806_02740
Hypothetical protein.
    
  0.540
C806_03287
Hypothetical protein.
    
  0.540
C806_04508
Hypothetical protein.
    
  0.540
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.