Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_01481DNA polymerase bacteriophage-type. (642 aa)    
Predicted Functional Partners:
C806_01480
Hypothetical protein.
 
     0.893
C806_01479
Hypothetical protein.
 
     0.886
C806_01487
Hypothetical protein.
 
 
   0.880
C806_01486
Hypothetical protein.
 
     0.874
C806_01485
Phage/plasmid primase, P4 family domain-containing protein.
 
     0.859
C806_01478
Hypothetical protein.
 
   
 0.849
C806_01484
Hypothetical protein.
 
     0.810
C806_00742
Hypothetical protein.
 
 
   0.791
C806_04969
Hypothetical protein.
 
 
   0.790
glyQS
glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.
    
 0.784
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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