Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_01499Hypothetical protein. (403 aa)    
Predicted Functional Partners:
C806_01498
Hypothetical protein.
 
     0.946
C806_01497
Hypothetical protein.
 
    
0.839
C806_00788
Hypothetical protein.
  
     0.773
C806_02691
Hypothetical protein.
  
     0.726
C806_04452
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
    
  0.723
ruvB
Holliday junction ATP-dependent DNA helicase ruvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
  
  
 0.718
C806_03749
Tyrosine recombinase xerC; Belongs to the 'phage' integrase family.
  
     0.713
C806_04292
Hypothetical protein.
  
     0.713
C806_02696
Hypothetical protein.
  
     0.712
C806_04474
Hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.694
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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