STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C806_01765Homoserine dehydrogenase. (400 aa)    
Predicted Functional Partners:
C806_01425
Aspartate-semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family.
  
 0.987
C806_01763
Aspartate kinase; Belongs to the aspartokinase family.
 0.980
C806_02239
Threonine synthase.
 
 0.979
C806_01380
Methionine synthase.
  
 
 0.975
C806_00175
Branched-chain amino acid aminotransferase.
  
 
 0.953
metAA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
  
 
 0.949
C806_00948
Hypothetical protein.
  
 
 0.947
C806_00178
Acetolactate synthase, small subunit.
 
 
 0.918
C806_02231
Acetolactate synthase, small subunit.
 
 
 0.917
C806_01046
L-serine dehydratase, iron-sulfur-dependent, beta subunit.
   
 
 0.902
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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