Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_01864Hypothetical protein. (267 aa)    
Predicted Functional Partners:
C806_01861
Hypothetical protein.
 
  
 0.833
C806_01865
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.793
C806_01863
Hypothetical protein.
       0.765
C806_01862
Hypothetical protein.
       0.726
C806_01866
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
  
 0.639
C806_01867
Hypothetical protein.
 
     0.631
C806_00576
Hypothetical protein.
  
 0.582
C806_01868
HPr family phosphocarrier.
       0.560
C806_01159
Hypothetical protein.
  
     0.537
thrS
threonine-tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 
  0.534
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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