Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_01915Spore cortex biosynthesis protein YabQ. (157 aa)    
Predicted Functional Partners:
C806_01916
Sporulation protein YabP.
 
  
 0.987
C806_01917
Hypothetical protein.
  
    0.831
C806_01925
Hypothetical protein.
  
     0.770
C806_01086
Hypothetical protein.
  
     0.748
C806_00458
Hypothetical protein.
  
     0.739
C806_01914
Cell division protein FtsL.
  
    0.733
C806_02547
Sporulation protein YqfD.
  
   
 0.700
C806_01918
DNA-binding protein HU-beta; Belongs to the bacterial histone-like protein family.
  
    0.692
C806_02548
Sporulation protein YqfC.
  
   
 0.688
C806_01081
Stage III sporulation protein AC.
  
  
 0.630
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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