STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_01965DnaD domain-containing protein. (372 aa)    
Predicted Functional Partners:
C806_01966
Hypothetical protein.
 
    0.929
C806_01178
Hypothetical protein.
  
     0.743
C806_01967
Ribose-phosphate diphosphokinase; Belongs to the ribose-phosphate pyrophosphokinase family.
 
     0.707
C806_02449
Hypothetical protein.
  
     0.680
C806_00640
Hypothetical protein.
  
     0.651
C806_01398
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.643
C806_02333
Hypothetical protein.
  
     0.627
C806_03310
Hypothetical protein.
  
     0.612
C806_00216
Hypothetical protein.
 
     0.611
C806_04181
Carbohydrate diacid regulator.
  
     0.602
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.