Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_01988Hypothetical protein. (195 aa)    
Predicted Functional Partners:
C806_01987
Hypothetical protein.
 
     0.819
C806_01986
Hypothetical protein; Belongs to the TelA family.
 
     0.818
C806_00485
Hypothetical protein.
   
 0.780
C806_01985
Tellurium resistance protein TerD.
       0.671
C806_02457
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
  
 0.593
C806_01984
Tellurium resistance protein TerD.
       0.586
C806_01989
Hypothetical protein.
       0.548
C806_01034
Hypothetical protein.
   
   0.517
C806_00816
Hypothetical protein.
   
   0.510
C806_01780
Hypothetical protein.
   
   0.510
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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