STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C806_01997Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (283 aa)    
Predicted Functional Partners:
C806_01996
Hypothetical protein.
 
     0.931
C806_01993
Hypothetical protein.
 
     0.768
C806_04455
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
   0.554
C806_04165
Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.540
C806_01998
Hypothetical protein.
       0.526
C806_01364
Hypothetical protein.
  
     0.523
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.496
C806_00583
Diguanylate cyclase (GGDEF) domain-containing protein.
  
     0.491
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.488
C806_04129
Hypothetical protein.
  
     0.484
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.