C806_02065 protein (Lachnospiraceae bacterium 31)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C806_02065

X-X-X-Leu-X-X-Gly heptad repeats protein. (839 aa)

Predicted Functional Partners:

C806_02066

0.947

C806_02470

0.799

C806_03473

0.766

C806_04551

0.766

C806_00385

0.759

potA

0.759

C806_02047

0.749

C806_01136

0.746

C806_03830

0.734

C806_03831

0.731

Your Current Organism:

Lachnospiraceae bacterium 31

NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C806_00385	C806_01136	C806_00385	C806_01136	Phosphate binding protein.	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.865
C806_00385	C806_02047	C806_00385	C806_02047	Phosphate binding protein.	Hypothetical protein.	0.827
C806_00385	C806_02065	C806_00385	C806_02065	Phosphate binding protein.	X-X-X-Leu-X-X-Gly heptad repeats protein.	0.759
C806_00385	C806_02470	C806_00385	C806_02470	Phosphate binding protein.	His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.	0.906
C806_00385	C806_03473	C806_00385	C806_03473	Phosphate binding protein.	Hypothetical protein.	0.872
C806_00385	C806_03830	C806_00385	C806_03830	Phosphate binding protein.	Hypothetical protein.	0.687
C806_00385	C806_03831	C806_00385	C806_03831	Phosphate binding protein.	Hypothetical protein.	0.808
C806_00385	C806_04551	C806_00385	C806_04551	Phosphate binding protein.	Zinc transport system permease.	0.832
C806_00385	potA	C806_00385	C806_01063	Phosphate binding protein.	Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	0.844
C806_01136	C806_00385	C806_01136	C806_00385	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Phosphate binding protein.	0.865
C806_01136	C806_02047	C806_01136	C806_02047	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Hypothetical protein.	0.862
C806_01136	C806_02065	C806_01136	C806_02065	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	X-X-X-Leu-X-X-Gly heptad repeats protein.	0.746
C806_01136	C806_02470	C806_01136	C806_02470	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.	0.936
C806_01136	C806_03473	C806_01136	C806_03473	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Hypothetical protein.	0.884
C806_01136	C806_03830	C806_01136	C806_03830	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Hypothetical protein.	0.693
C806_01136	C806_03831	C806_01136	C806_03831	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Hypothetical protein.	0.837
C806_01136	C806_04551	C806_01136	C806_04551	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Zinc transport system permease.	0.880
C806_01136	potA	C806_01136	C806_01063	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	0.878
C806_02047	C806_00385	C806_02047	C806_00385	Hypothetical protein.	Phosphate binding protein.	0.827
C806_02047	C806_01136	C806_02047	C806_01136	Hypothetical protein.	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.862