STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_02101Hypothetical protein. (163 aa)    
Predicted Functional Partners:
C806_02102
Hypothetical protein; Belongs to the 'phage' integrase family.
     0.994
C806_02103
Excisionase family DNA binding domain-containing protein.
 
   
 0.901
C806_02104
Hypothetical protein.
 
     0.879
C806_04452
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
    
  0.723
C806_02022
Hypothetical protein.
    
 0.687
C806_02105
Hypothetical protein.
  
     0.687
C806_01611
Sigma-70 family RNA polymerase sigma factor.
  
     0.672
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
  0.637
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
    
 0.633
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
    
  0.631
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
Server load: medium (72%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.