STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C806_02259Hypothetical protein. (285 aa)    
Predicted Functional Partners:
C806_04452
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
    
  0.931
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
    
 0.906
C806_01732
PTS system, glucose subfamily, IIA component.
    
  0.673
C806_02198
PTS system, sucrose-specific IIBC component.
    
  0.673
C806_02407
PTS system, glucose subfamily, IIA component.
    
  0.673
C806_02528
PTS system, glucose subfamily, IIA component.
    
  0.673
C806_03518
PTS system, beta-glucoside-specific IIABC component.
    
  0.673
C806_01781
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.659
C806_02256
Cof-like hydrolase.
 
      0.496
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
     
 0.435
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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