STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_02408Hypothetical protein. (338 aa)    
Predicted Functional Partners:
C806_02407
PTS system, glucose subfamily, IIA component.
    
 0.811
C806_00575
Hypothetical protein.
    
 
 0.756
C806_00576
Hypothetical protein.
    
 
 0.721
C806_01732
PTS system, glucose subfamily, IIA component.
    
 0.705
C806_02198
PTS system, sucrose-specific IIBC component.
    
 0.705
C806_02528
PTS system, glucose subfamily, IIA component.
    
 0.705
C806_03518
PTS system, beta-glucoside-specific IIABC component.
    
 0.705
C806_03389
Hypothetical protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.681
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 0.604
C806_03391
Hypothetical protein.
 
 
  0.604
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.