Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
C806_02433 | C806_02434 | C806_02433 | C806_02434 | Hypothetical protein. | Cell division protein FtsW; Belongs to the SEDS family. | 0.972 |
C806_02433 | C806_03190 | C806_02433 | C806_03190 | Hypothetical protein. | Hypothetical protein. | 0.850 |
C806_02433 | C806_03218 | C806_02433 | C806_03218 | Hypothetical protein. | Hypothetical protein. | 0.865 |
C806_02433 | mraY | C806_02433 | C806_02436 | Hypothetical protein. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.889 |
C806_02433 | murC | C806_02433 | C806_01964 | Hypothetical protein. | UDP-N-acetylmuramate-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.904 |
C806_02433 | murD | C806_02433 | C806_02435 | Hypothetical protein. | UDP-N-acetylmuramoylalanine-D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.968 |
C806_02433 | murE | C806_02433 | C806_01114 | Hypothetical protein. | UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.698 |
C806_02433 | murF | C806_02433 | C806_02959 | Hypothetical protein. | UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.877 |
C806_02433 | murG | C806_02433 | C806_00479 | Hypothetical protein. | Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.892 |
C806_02434 | C806_02433 | C806_02434 | C806_02433 | Cell division protein FtsW; Belongs to the SEDS family. | Hypothetical protein. | 0.972 |
C806_02434 | C806_03218 | C806_02434 | C806_03218 | Cell division protein FtsW; Belongs to the SEDS family. | Hypothetical protein. | 0.649 |
C806_02434 | mraY | C806_02434 | C806_02436 | Cell division protein FtsW; Belongs to the SEDS family. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.959 |
C806_02434 | murC | C806_02434 | C806_01964 | Cell division protein FtsW; Belongs to the SEDS family. | UDP-N-acetylmuramate-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.894 |
C806_02434 | murD | C806_02434 | C806_02435 | Cell division protein FtsW; Belongs to the SEDS family. | UDP-N-acetylmuramoylalanine-D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.971 |
C806_02434 | murE | C806_02434 | C806_01114 | Cell division protein FtsW; Belongs to the SEDS family. | UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.590 |
C806_02434 | murF | C806_02434 | C806_02959 | Cell division protein FtsW; Belongs to the SEDS family. | UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.798 |
C806_02434 | murG | C806_02434 | C806_00479 | Cell division protein FtsW; Belongs to the SEDS family. | Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.913 |
C806_02434 | murI | C806_02434 | C806_03313 | Cell division protein FtsW; Belongs to the SEDS family. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.440 |
C806_03190 | C806_02433 | C806_03190 | C806_02433 | Hypothetical protein. | Hypothetical protein. | 0.850 |
C806_03190 | C806_03218 | C806_03190 | C806_03218 | Hypothetical protein. | Hypothetical protein. | 0.778 |
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