STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_02439Hypothetical protein. (177 aa)    
Predicted Functional Partners:
C806_02433
Hypothetical protein.
 
     0.866
C806_02438
Hypothetical protein.
 
     0.866
rsmH
Ribosomal RNA small subunit methyltransferase H 2; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
       0.793
C806_00488
Hypothetical protein.
  
     0.774
C806_00640
Hypothetical protein.
  
     0.774
C806_02333
Hypothetical protein.
  
     0.774
C806_00216
Hypothetical protein.
  
     0.773
C806_00472
Hypothetical protein.
  
     0.773
C806_01872
Hypothetical protein.
  
     0.773
C806_02307
Hypothetical protein.
  
     0.773
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.