STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_02481Hypothetical protein. (324 aa)    
Predicted Functional Partners:
C806_02483
Hypothetical protein.
 
     0.933
C806_02482
Hypothetical protein; Belongs to the membrane-bound acyltransferase family.
 
  
  0.903
C806_02485
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
 
   
 0.899
C806_02484
Hypothetical protein.
 
     0.858
C806_02478
Hypothetical protein.
  
    0.775
C806_02479
RsmE family RNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.773
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
       0.773
C806_02486
Hypothetical protein.
       0.703
C806_01838
Hypothetical protein.
 
     0.687
C806_00663
Hypothetical protein.
  
     0.664
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.