STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_02547Sporulation protein YqfD. (420 aa)    
Predicted Functional Partners:
C806_02548
Sporulation protein YqfC.
 
  
 0.996
C806_01405
Sporulation integral membrane protein YlbJ.
 
   
 0.862
C806_01916
Sporulation protein YabP.
 
   
 0.854
ybeY
YbeY/UPF0054 family metalloprotein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.842
C806_02546
Hypothetical protein.
       0.842
C806_02346
Stage II sporulation protein P.
  
   
 0.827
C806_03314
Stage II sporulation protein R.
  
  
 0.818
C806_02545
Hypothetical protein.
       0.817
C806_02431
sigma-E processing peptidase SpoIIGA.
  
   
 0.797
C806_01079
Stage III sporulation protein AA.
  
  
 0.793
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.