STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C806_02587[FeFe] hydrogenase, group B1/B3. (482 aa)    
Predicted Functional Partners:
C806_04062
Hypothetical protein.
 
 0.997
C806_02517
NADH-quinone oxidoreductase subunit F.
 
 
 0.996
C806_04452
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
 0.996
C806_01426
Hypothetical protein.
 
 0.981
C806_02518
NADH-quinone oxidoreductase subunit E.
  
 0.973
C806_02463
Hypothetical protein.
 
  
 0.972
rnfB
Electron transport complex, rnfabcdge type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
 
 
0.964
C806_01663
Hypothetical protein.
  
 
 0.955
C806_04063
Hypothetical protein.
 
 
 0.955
C806_01781
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.939
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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