STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_02620Trehalose operon repressor. (247 aa)    
Predicted Functional Partners:
C806_02619
PTS system, glucose-like IIB component.
 
   
 0.869
C806_04452
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
    
  0.848
C806_02618
PTS system, glucose subfamily, IIA component.
 
   
 0.830
C806_02198
PTS system, sucrose-specific IIBC component.
 
 
 0.676
C806_02407
PTS system, glucose subfamily, IIA component.
 
 
 0.667
C806_02528
PTS system, glucose subfamily, IIA component.
 
 
 0.586
C806_01321
Hypothetical protein.
 
  
 0.583
C806_00004
PTS system, glucose-like IIB component.
 
  
 0.554
C806_02529
PTS system, glucose-like IIB component.
 
  
 0.550
C806_03518
PTS system, beta-glucoside-specific IIABC component.
 
 
 0.545
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.