C806_02749 protein (Lachnospiraceae bacterium 31)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C806_02749

Hypothetical protein. (294 aa)

Predicted Functional Partners:

C806_01119

0.980

C806_04126

0.898

C806_00575

0.891

C806_00576

0.864

metG

0.854

C806_01121

0.848

C806_01380

0.830

folD

0.818

C806_02751

0.808

C806_02750

0.802

Your Current Organism:

Lachnospiraceae bacterium 31

NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C806_00575	C806_00576	C806_00575	C806_00576	Hypothetical protein.	Hypothetical protein.	0.999
C806_00575	C806_01380	C806_00575	C806_01380	Hypothetical protein.	Methionine synthase.	0.622
C806_00575	C806_02749	C806_00575	C806_02749	Hypothetical protein.	Hypothetical protein.	0.891
C806_00575	C806_04126	C806_00575	C806_04126	Hypothetical protein.	Phosphoribosylformylglycinamidine synthase.	0.835
C806_00575	metG	C806_00575	C806_00595	Hypothetical protein.	methionine-tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.	0.767
C806_00576	C806_00575	C806_00576	C806_00575	Hypothetical protein.	Hypothetical protein.	0.999
C806_00576	C806_01119	C806_00576	C806_01119	Hypothetical protein.	Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	0.474
C806_00576	C806_01380	C806_00576	C806_01380	Hypothetical protein.	Methionine synthase.	0.588
C806_00576	C806_02749	C806_00576	C806_02749	Hypothetical protein.	Hypothetical protein.	0.864
C806_00576	C806_04126	C806_00576	C806_04126	Hypothetical protein.	Phosphoribosylformylglycinamidine synthase.	0.940
C806_00576	folD	C806_00576	C806_02250	Hypothetical protein.	FolD protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.	0.688
C806_00576	metG	C806_00576	C806_00595	Hypothetical protein.	methionine-tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.	0.780
C806_01119	C806_00576	C806_01119	C806_00576	Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	Hypothetical protein.	0.474
C806_01119	C806_01121	C806_01119	C806_01121	Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	Hypothetical protein.	0.926
C806_01119	C806_01380	C806_01119	C806_01380	Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	Methionine synthase.	0.576
C806_01119	C806_02749	C806_01119	C806_02749	Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	Hypothetical protein.	0.980
C806_01119	C806_04126	C806_01119	C806_04126	Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	Phosphoribosylformylglycinamidine synthase.	0.745
C806_01119	folD	C806_01119	C806_02250	Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	FolD protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.	0.883
C806_01119	metG	C806_01119	C806_00595	Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	methionine-tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.	0.674
C806_01121	C806_01119	C806_01121	C806_01119	Hypothetical protein.	Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	0.926