Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_03248Hypothetical protein. (172 aa)    
Predicted Functional Partners:
C806_03245
ParB-like partition protein; Belongs to the ParB family.
 
     0.857
C806_03246
Chromosome partitioning protein.
 
     0.779
C806_03247
Hypothetical protein.
       0.773
C806_03244
Hypothetical protein.
 
     0.758
C806_04839
Hypothetical protein.
  
     0.655
C806_02824
Hypothetical protein.
  
     0.527
C806_00911
Hypothetical protein.
  
     0.514
C806_03249
Hypothetical protein.
       0.512
C806_03713
Hypothetical protein.
 
     0.500
C806_05022
Hypothetical protein.
  
     0.493
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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