STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C806_03260Sigma-70 family RNA polymerase sigma factor. (152 aa)    
Predicted Functional Partners:
C806_01564
Hypothetical protein.
 
     0.779
C806_03659
Hypothetical protein.
 
     0.779
C806_05057
Hypothetical protein.
 
     0.779
C806_04296
Hypothetical protein.
 
     0.776
C806_04989
Hypothetical protein.
 
     0.775
C806_03261
Hypothetical protein.
       0.773
C806_03643
Hypothetical protein.
  
     0.773
C806_03665
Hypothetical protein.
  
     0.651
C806_04996
Hypothetical protein.
  
     0.645
C806_01570
Hypothetical protein.
  
     0.637
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.