STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rhaAL-rhamnose isomerase; Belongs to the rhamnose isomerase family. (419 aa)    
Predicted Functional Partners:
C806_03272
Rhamnulokinase.
 
 
 0.996
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
 
  
 0.927
C806_03500
Hypothetical protein.
  
 
 0.761
C806_00551
Hypothetical protein.
 
  
 0.522
C806_03273
Hypothetical protein.
       0.464
C806_03270
Hypothetical protein.
       0.420
C806_00170
PTS system, Fru family, IIC component.
   
  
 0.409
C806_01736
PTS system, Fru family, IIC component.
   
  
 0.409
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
      
 0.408
C806_00635
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family.
      
 0.408
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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