STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaAL-rhamnose isomerase; Belongs to the rhamnose isomerase family. (419 aa)    
Predicted Functional Partners:
C806_03272
Rhamnulokinase.
 
 
 0.998
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
 
  
 0.937
C806_03500
Hypothetical protein.
  
 
 0.872
C806_03392
Hypothetical protein.
   
 
 0.576
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
      
 0.525
C806_01028
Hypothetical protein; Belongs to the GHMP kinase family.
      
 0.525
C806_00551
Hypothetical protein.
 
  
 0.524
C806_00170
PTS system, Fru family, IIC component.
   
  
 0.506
C806_01736
PTS system, Fru family, IIC component.
   
  
 0.506
C806_03277
Hypothetical protein.
   
 
 0.495
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.