Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_03317Hypothetical protein. (303 aa)    
Predicted Functional Partners:
C806_01670
Hypothetical protein.
 
 0.920
C806_00170
PTS system, Fru family, IIC component.
   
 0.892
C806_01736
PTS system, Fru family, IIC component.
   
 0.892
C806_04452
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
    
 0.823
C806_00354
Two-component system, response regulator YesN.
 
  
  0.800
C806_04196
Hypothetical protein.
  
 
   0.781
C806_02426
Hypothetical protein.
 
0.765
C806_00201
Hypothetical protein.
 
0.762
C806_04542
Hypothetical protein.
  
     0.757
C806_03428
Hypothetical protein.
  
 
   0.752
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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