C806_03334 protein (Lachnospiraceae bacterium 31)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C806_03334

SCIFF radical SAM maturase. (467 aa)

Predicted Functional Partners:

C806_03335

0.961

secF

0.737

C806_00416

0.621

C806_04143

0.447

C806_01966

0.445

C806_03102

0.431

Your Current Organism:

Lachnospiraceae bacterium 31

NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C806_00416	C806_03334	C806_00416	C806_03334	Hypothetical protein.	SCIFF radical SAM maturase.	0.621
C806_00416	C806_03335	C806_00416	C806_03335	Hypothetical protein.	Six-cysteine peptide SCIFF.	0.476
C806_01966	C806_03334	C806_01966	C806_03334	Hypothetical protein.	SCIFF radical SAM maturase.	0.445
C806_03102	C806_03334	C806_03102	C806_03334	Hybrid cluster protein-associated redox disulfide domain.	SCIFF radical SAM maturase.	0.431
C806_03102	C806_03335	C806_03102	C806_03335	Hybrid cluster protein-associated redox disulfide domain.	Six-cysteine peptide SCIFF.	0.496
C806_03334	C806_00416	C806_03334	C806_00416	SCIFF radical SAM maturase.	Hypothetical protein.	0.621
C806_03334	C806_01966	C806_03334	C806_01966	SCIFF radical SAM maturase.	Hypothetical protein.	0.445
C806_03334	C806_03102	C806_03334	C806_03102	SCIFF radical SAM maturase.	Hybrid cluster protein-associated redox disulfide domain.	0.431
C806_03334	C806_03335	C806_03334	C806_03335	SCIFF radical SAM maturase.	Six-cysteine peptide SCIFF.	0.961
C806_03334	C806_04143	C806_03334	C806_04143	SCIFF radical SAM maturase.	Hypothetical protein.	0.447
C806_03334	secF	C806_03334	C806_03333	SCIFF radical SAM maturase.	Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.	0.737
C806_03335	C806_00416	C806_03335	C806_00416	Six-cysteine peptide SCIFF.	Hypothetical protein.	0.476
C806_03335	C806_03102	C806_03335	C806_03102	Six-cysteine peptide SCIFF.	Hybrid cluster protein-associated redox disulfide domain.	0.496
C806_03335	C806_03334	C806_03335	C806_03334	Six-cysteine peptide SCIFF.	SCIFF radical SAM maturase.	0.961
C806_03335	secF	C806_03335	C806_03333	Six-cysteine peptide SCIFF.	Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.	0.658
C806_04143	C806_03334	C806_04143	C806_03334	Hypothetical protein.	SCIFF radical SAM maturase.	0.447
secF	C806_03334	C806_03333	C806_03334	Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.	SCIFF radical SAM maturase.	0.737
secF	C806_03335	C806_03333	C806_03335	Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.	Six-cysteine peptide SCIFF.	0.658