STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_03335Six-cysteine peptide SCIFF. (46 aa)    
Predicted Functional Partners:
C806_03334
SCIFF radical SAM maturase.
 
 
   0.961
C806_02862
Cys-rich peptide radical SAM maturase CcpM.
 
 
   0.864
C806_04653
Cys-rich peptide radical SAM maturase CcpM.
 
 
   0.860
C806_02856
Cys-rich peptide radical SAM maturase CcpM.
 
 
   0.852
C806_04382
Hypothetical protein.
 
 
   0.851
C806_02364
Radical SAM additional 4Fe4S-binding SPASM domain-containing protein.
 
 
   0.844
C806_02882
Radical SAM additional 4Fe4S-binding SPASM domain-containing protein.
 
 
   0.836
C806_04381
Radical SAM additional 4Fe4S-binding SPASM domain-containing protein.
 
 
   0.834
C806_04390
Radical SAM additional 4Fe4S-binding SPASM domain-containing protein; Overlaps another CDS with the same product name.
 
 
   0.809
C806_02368
Radical SAM additional 4Fe4S-binding SPASM domain-containing protein.
 
 
   0.792
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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