STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C806_03360ATP-binding cassette, subfamily B, bacterial; Overlaps another CDS with the same product name. (583 aa)    
Predicted Functional Partners:
C806_03359
ATP-binding cassette, subfamily B, bacterial; Overlaps another CDS with the same product name.
 
  
 
0.883
C806_03361
Hypothetical protein.
 
   
 0.745
potA
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
     
0.714
C806_02017
Hypothetical protein.
 
 
 
0.650
C806_02020
Hypothetical protein.
 
 
 
0.643
C806_00576
Hypothetical protein.
  
 
 0.609
C806_04505
Hypothetical protein.
 
     
0.605
C806_00575
Hypothetical protein.
  
  
 0.509
C806_04920
Hypothetical protein.
  
  
 
0.498
C806_01931
ATP-binding cassette, subfamily B, bacterial.
  
  
 
0.488
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.