STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_03391Hypothetical protein. (391 aa)    
Predicted Functional Partners:
C806_03389
Hypothetical protein; Belongs to the binding-protein-dependent transport system permease family.
 0.991
C806_03390
Hypothetical protein.
 
 0.978
C806_03302
Methyl-galactoside transport system ATP-binding protein.
 
 0.953
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.939
C806_04460
Hypothetical protein.
   
 0.931
C806_00393
Hypothetical protein.
   
 0.900
C806_03451
PAS domain S-box protein.
   
 0.900
C806_00392
Hypothetical protein.
   
 0.884
C806_01305
PAS domain S-box protein.
   
 0.884
C806_03474
Hypothetical protein.
   
 0.884
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.