STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C806_03392Hypothetical protein. (306 aa)    
Predicted Functional Partners:
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 0.941
C806_00170
PTS system, Fru family, IIC component.
    
 0.856
C806_01736
PTS system, Fru family, IIC component.
    
 0.856
C806_03395
Hypothetical protein.
 
 
 0.830
C806_03394
Hypothetical protein.
 
 
 0.829
C806_00359
Hypothetical protein.
  
  
  0.793
C806_01818
Hypothetical protein.
  
 
 0.743
C806_02423
Hypothetical protein.
  
 
 0.736
C806_04669
2-dehydro-3-deoxygluconokinase.
  
 
 0.736
C806_04671
2-dehydro-3-deoxygluconokinase.
  
 
 0.736
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.