STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C806_03396Hypothetical protein. (329 aa)    
Predicted Functional Partners:
C806_00575
Hypothetical protein.
    
 
 0.814
C806_02719
Hypothetical protein.
  
     0.774
C806_01956
Hypothetical protein.
  
     0.763
C806_00576
Hypothetical protein.
    
 
 0.742
C806_03389
Hypothetical protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.706
C806_01642
Hypothetical protein.
  
     0.677
C806_03391
Hypothetical protein.
 
 
 0.674
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 0.641
C806_01732
PTS system, glucose subfamily, IIA component.
    
 0.637
C806_02198
PTS system, sucrose-specific IIBC component.
    
 0.637
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.