Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_03500Hypothetical protein. (476 aa)    
Predicted Functional Partners:
C806_01124
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.924
C806_03501
Hypothetical protein.
 
  
 0.866
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
  
 
 0.829
C806_04049
RpiB/LacA/LacB family sugar-phosphate isomerase.
    
 0.829
C806_03509
Hypothetical protein.
 
   
 0.818
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
  
 
 0.761
C806_03117
Hypothetical protein; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
 
 0.752
C806_03392
Hypothetical protein.
    
 0.752
C806_00359
Hypothetical protein.
    
  0.749
C806_03272
Rhamnulokinase.
     
  0.728
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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