Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C806_03535Hypothetical protein. (279 aa)    
Predicted Functional Partners:
C806_03536
Hypothetical protein.
 
   0.974
C806_03829
Antibiotic transport system ATP-binding protein.
 
   0.671
C806_03173
Hypothetical protein.
 
   0.638
C806_00269
Hypothetical protein.
  
   0.567
C806_00421
Hypothetical protein.
  
   0.567
C806_00597
Hypothetical protein.
  
   0.567
C806_00600
Hypothetical protein.
  
   0.567
C806_00614
Hypothetical protein.
  
   0.567
C806_01537
Hypothetical protein.
  
   0.567
C806_01619
Hypothetical protein.
  
   0.567
Your Current Organism:
Lachnospiraceae bacterium 31
NCBI taxonomy Id: 397288
Other names: L. bacterium 3-1, Lachnospiraceae bacterium 3-1
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